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Case Studies/Case Illustration |
The Preston Robert Tisch Brain Tumor Center (S.G., D.R., J.V., J.Q., H.S.F.) and Departments of Pediatrics (S.G., D.R., H.S.F.), Surgery (S.G., D.R., H.S.F), Medicine (J.V.), Neurology (J.Q.), Genetics (M.M.), and Neuro-radiology (J.E.), Duke University Medical Center, Durham, NC; Department of Pathology (R.B.), The University of Texas M. D. Anderson Cancer Center, Houston, TX; and Departments of Pathology (W.F.) and Clinical Cancer Genetics (M.C., L.S.), Ohio State University, Columbus, OH; USA
Address correspondence to Sridharan Gururangan, MRCP (UK), The Preston Robert Tisch Brain Tumor Center at Duke, Duke University Medical Center, Box 3624, DUMC, Durham, NC 27710, USA (gurur002{at}mc.duke.edu).
| Abstract |
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Key Words: Lynch syndrome malignant glioma PMS2
| Introduction |
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| Case Report |
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| Methods |
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Using standard techniques, formalin-fixed, paraffin-embedded sections of tumor were processed and analyzed by light microscopy for IHC expression of MMR proteins as previously described.7 Adjacent normal tissue and surrounding tissue lymphocytes served as internal positive controls for each case. Nuclear staining of the tumor was scored as either present or absent compared with the corresponding internal control. The adenomatosis polyposis coli (APC) gene was sequenced from the genomic DNA obtained from the patient's peripheral blood lymphocytes by sequence determination (forward and reverse directions) of 8,532 base pairs (bp) of 15 exons and 420 bp of the adjacent noncoding introns. Microsatellite instability analysis was performed using formalin-fixed, paraffin-embedded sections of tumor and corresponding normal tissue. DNA was extracted from microdissected areas of tumor and normal tissue from sections on glass slides. Following DNA amplification using fluorescent labeled primers, a panel of five microsatellites recommended by the NCI (BAT25, BAT26, D2S123, D5S346, and D173250) was analyzed for allelic shift using a multiplex fluorescence-based PCR assay. Tumors were classified as MSI-high (allelic shift with two or more markers), MSI-low (allelic shift with one marker), or MS-stable. Mutation screening within PMS2 was performed using a recently described method that avoided amplifying pseudogene sequences.8
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| Results |
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An aliquot of genomic DNA extracted from the patient's peripheral blood lymphocytes was analyzed and found to be negative for known APC mutations. The remaining DNA sample was of poor quality and could not be analyzed further for MMR gene mutations. DNA analysis of the peripheral blood lymphocytes from the maternal sample revealed a single nucleotide polymorphism (SNP) that introduced a premature stop codon in exon 11 (c.1840A>T; p.Lys614Stp) (Fig. 4). Two additional SNPs were found in the maternal sample (c.1408C>T and c.1454C>A), both of which were also in exon 11 (Fig. 4). Single site analysis of the paternal sample showed the presence of the same premature stop codon in exon 11 as well as the c.1454C>A SNP (Fig. 4).
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| Discussion |
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The PMS2 gene has been localized to chromosome 7p22 and is similar to the mutL MMR gene found in Escherichia coli.6 The mutL
heterodimer of PMS2 and MLH1 (another MutL homologue) functions as an MMR protein in humans.6 Germline PMS2 mutations are found in only about 2% of patients with Lynch syndrome and are mostly deleterious in nature. In general, PMS2 mutations are believed to have low penetrance in the heterozygous state but can cause tumors at an earlier age in those with homozygosity for the mutated gene, as seen in our patient. Although PMS2 knockout mice have mutational rates similar to MLH1 null counterparts, the incidence of cancer in PMS2-deficient individuals is extremely rare and has been reported in only about five families thus far.6 Mutation sites in the PMS2 gene have included exon 14 (R802X), junction of exon 10/11 (1145ins20), exon 11 and 14 (1221delG, 2361delCTTC), exon 5 and 13 (R134X, 2184delTC), and exon 12 (E705K).6 Our patient inherited a nonsense mutation of exon 11 (c.1840A>T) from both parents that resulted in the introduction of a stop codon at residue 614; this specific mutation, to the best of our knowledge, has not been reported previously.6,8
While MMR gene mutations are associated with MSI in >95% of cases, occasional patients are apparently MS-stable as assessed by conventional methods in the face of impaired gene function. In a recent population-based analysis of MMR mutations that sought to identify Lynch syndrome in 543 women with endometrial carcinoma, Hampel et al.9 found that one patient, whose tumor was MS-stable, had absent MSH6 immunostaining and a corresponding deleterious MSH6 mutation. It is likely that our patient has a similar combination of MS stability (based on testing with the MSI markers as recommended by the NIH) in the face of a nonsense PMS2 mutation. Similarly, Kuismanen et al.10 have shown that in a group of patients with endometrial and colorectal cancers with identical predisposing mutations in MLH1 and MSH2, 5 (11%) of 44 colorectal tumors and 13 (23%) of 57 endometrial cancers were stable for all microsatellite markers studied, even though IHC analysis demonstrated the absence of the specific MMR protein. Possible reasons for the inability to demonstrate MS instability could be related to normal tissue contamination or intratumoral inhomogeneity and overrepresentation of a MS-stable clone.10 However, apparent MS stability in the tumor tissue of our patient might imply that the absence of PMS2 protein did not play a role in the development of the colorectal or brain tumors. Alterations in the PMS2 gene can also cause malignancies distinct from those found in Lynch syndrome. De Vos et al.6 have recently described an autosomal recessive syndrome in a family characterized by café-au-lait spots and childhood malignancies (notably supratentorial primitive neuroectodermal tumors) associated with a homozygous mutation in exon 14 of the PMS2 gene. There was a notable absence of bowel cancers in this family, and the heterozygotes were clinically normal.
Additional features of interest in this patient are the cooccurrence of agenesis of the corpus callosum, mental retardation, and transcobalamin II deficiency, which have not been reported previously in patients with Lynch syndrome. Agenesis of the corpus callosum occurs in <0.7% of children worldwide and can be associated with at least 17 syndromes of autosomal or X-chromosome-linked inheritance.11 Agenesis can be partial or complete. The neurologic manifestations of this condition are related partly to the agenesis and associated other CNS malformations. Patients usually present with mental retardation, seizures, and motor deficits.11 Transcobalamin II deficiency is a autosomal recessive disorder that leads to absence of transcobalamin II and symptoms of vitamin B-12 deficiency.12,13 Transcobalamin II (TCII) is a carrier protein for vitamin B-12 in the plasma and is responsible for delivery of the vitamin to the cell via the TCII receptor.14 The TCII gene is located on chromosome 22q12-13.15 Transcobalamin II deficiency usually presents following birth with megaloblastic anemia, irritability, failure to thrive, neurologic abnormalities, and immune deficiency usually in the form of hypogammaglobulinemia.13,14 The condition usually responds to weekly injections of high-dose vitamin B-12 (usually 1 mg) and can lead to impaired brain development due to delayed diagnosis and/or absence of specific treatment.13
There is an unclear relationship between these two specific genetic conditions and the germline PMS2 mutation in our patient. Although the parents of our patient are obligate carriers of a mutated TCII gene, the exact genetic mutation that resulted in agenesis of the corpus callosum in our patient is unknown. Of interest, agenesis of the corpus callosum has been associated with mutations in the region of 7p13 in the acrocallosal and Greig's cephalopolysyndactyly syndromes.11 However, it is unclear whether the patient's brain malformation was a familial trait, because none of his siblings with transcobalamin II deficiency have had abnormalities of the corpus callosum.
| Footnotes |
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Received for publication November 16, 2006. Accepted for publication January 8, 2007.
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Seetharam B, Li N. Transcobalamin II and its cell surface receptor. Vitam Horm. 2000;59: 337-366.[Medline]
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